STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3958acyl-CoA dehydrogenase. (591 aa)    
Predicted Functional Partners:
RMCC_1288
3-hydroxyacyl-CoA dehydrogenase.
  
 0.861
RMCC_2060
Electron transfer flavoprotein alpha subunit fixB.
 
 0.848
RMCC_2059
Electron transfer flavoprotein beta subunit fixA.
  
 0.810
RMCC_2520
Fatty acyl-CoA synthetase.
  
 0.727
pks5-2
Polyketide synthase pks5.
  
 0.721
RMCC_6601
Beta-ketoacyl synthase.
  
 0.721
RMCC_5324
acyl-CoA ligase.
   
 
 0.673
RMCC_1529
Oxidoreductase.
  
 0.661
RMCC_6782
Thioester reductase-like protein.
  
 0.661
RMCC_6783
fatty-acid-CoA ligase FadD9.
  
 0.661
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.