STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4040Beta-lactamase. (277 aa)    
Predicted Functional Partners:
RMCC_4043
Zn-dependent hydrolase, glyoxylase.
       0.770
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
    0.751
RMCC_4041
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
       0.750
RMCC_4039
Protein of unknown function.
       0.652
RMCC_4042
Mycothiol-dependent formaldehyde dehydrogenase.
       0.591
RMCC_5848
Putative secreted chitinase.
    
 0.568
RMCC_3558
Hydrolase.
 
  
 0.554
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.537
RMCC_3636
N-acetylmuramoyl-L-alanine amidase.
 
  
  0.469
RMCC_1902
NLP/P60 protein.
 
 
  0.462
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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