STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4043Zn-dependent hydrolase, glyoxylase. (207 aa)    
Predicted Functional Partners:
RMCC_4042
Mycothiol-dependent formaldehyde dehydrogenase.
 
     0.957
RMCC_5437
Glyoxalase II.
  
  
 
0.797
RMCC_4040
Beta-lactamase.
       0.770
RMCC_0120
Zn-dependent hydrolase.
 
 
0.735
RMCC_3908
Beta-lactamase domain-containing protein.
 
 
0.723
RMCC_4455
Metallo-beta-lactamase superfamily protein.
  
  
  0.703
RMCC_0072
Molybdopterin biosynthesis-like protein MoeZ.
  
 0.629
vldX
Putative metalloisomerase.
    
  0.610
RMCC_0798
Glyoxalase/bleomycin resistance protein.
    
  0.610
RMCC_4041
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
       0.562
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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