STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4146Uncharacterized protein. (110 aa)    
Predicted Functional Partners:
RMCC_2788
glycine/D-amino acid oxidase, deaminating.
 
    0.677
RMCC_5081
Regulatory protein.
  
     0.590
RMCC_3615
TetR family transcriptional regulator.
  
     0.575
RMCC_4145
acyl-CoA dehydrogenase.
       0.564
RMCC_1005
FAD dependent oxidoreductase.
 
    0.560
RMCC_4142
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.505
RMCC_4144
enoyl-CoA hydratase.
  
    0.505
RMCC_1620
FAD dependent oxidoreductase.
 
    0.504
RMCC_4143
Phenylacetic acid-responsive transcriptional repressor.
       0.503
RMCC_4418
UDP-glycosyltransferase, MGT.
 
     0.502
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.