STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_42663-oxoacyl-ACP synthase. (335 aa)    
Predicted Functional Partners:
RMCC_2496
Fatty acid synthase.
  
 
 0.998
RMCC_3300
acetyl-CoA carboxylase beta chain.
 
 
 0.987
RMCC_4026
Malonyl CoA-acyl carrier protein transacylase fabD.
 
 
 0.987
RMCC_5672
acetyl-CoA carboxylase carboxyl transferase beta subunit accD3.
 
 
 0.987
mdcH
Malonate decarboxylase epsilon subunit.
 
 
 0.967
RMCC_6601
Beta-ketoacyl synthase.
 
 
 0.967
RMCC_4268
Acetolactate synthase; Belongs to the TPP enzyme family.
 
   
 0.961
pks5-2
Polyketide synthase pks5.
  
 
 0.960
RMCC_4028
3-oxoacyl-(acyl carrier protein) synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.953
RMCC_4029
3-oxoacyl-ACP synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.949
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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