STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_43443-beta hydroxysteroid dehydrogenase/isomerase. (361 aa)    
Predicted Functional Partners:
RMCC_6174
Cholesterol oxidase precursor choD.
     
 0.940
RMCC_1557
Cytochrome P450.
   
 0.924
RMCC_1606
Cytochrome P450.
   
 0.909
RMCC_2895
Cytochrome P450.
   
 0.909
RMCC_1483
Cytochrome P450.
   
  0.908
RMCC_0665
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
 0.899
RMCC_5324
acyl-CoA ligase.
   
 
 0.883
fadD19
fatty-acid-CoA ligase.
   
 
 0.880
RMCC_2763
AMP-dependent synthetase and ligase.
   
 
 0.880
RMCC_5037
acyl-CoA synthetase.
   
 
 0.878
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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