STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4396Transmembrane serine/threonine-protein kinase E pknE. (547 aa)    
Predicted Functional Partners:
RMCC_5547
Serine/threonine phosphatase ppp.
 
 0.882
RMCC_4395
DNA-binding transcriptional activator.
 
 
 
 0.789
RMCC_3013
Serine/threonine protein phosphatase.
 
 0.752
RMCC_2803
FHA domain-containing protein.
 
 
 
 0.728
RMCC_0345
Family 3 adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
 
  
 0.620
RMCC_0396
Lipopolysaccharide biosynthesis.
    
   0.577
RMCC_0662
Lipopolysaccharide biosynthesis.
    
   0.577
RMCC_5963
Uncharacterized protein.
    
   0.577
RMCC_5965
Protein tyrosine kinase.
    
   0.577
RMCC_5549
FHA domain-containing protein.
 
 
 
 0.570
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.