STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4469Chemotaxis protein methyltransferase CheR. (613 aa)    
Predicted Functional Partners:
RMCC_4471
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
 
 0.999
RMCC_3791
Two-component system sensor kinase.
  
 0.996
RMCC_1968
GAF sensor-containing diguanylate cyclase/phosphodiesterase.
 
 0.955
RMCC_6191
Family 3 adenylate cyclase.
 
 0.946
RMCC_3883
Oxidoreductase subunit alpha.
   
   0.911
RMCC_0345
Family 3 adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
 
 
 0.895
RMCC_3790
Response regulator receiver protein.
 
 
 0.886
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
    
   0.885
RMCC_1935
Diguanylate phosphodiesterase.
 
 
 0.871
RMCC_3922
LuxR family transcriptional regulator.
 
 
 
 0.860
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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