STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4499ABC transporter. (270 aa)    
Predicted Functional Partners:
RMCC_4500
ABC transporter.
 
 
  0.969
RMCC_4563
ABC transporter ATP-binding protein.
 
 
  0.851
RMCC_3129
Daunorubicin resistance ABC transporter ATPase subunit.
 
 
  0.847
RMCC_4501
MarR family transcriptional regulator.
 
     0.844
RMCC_0429
Daunorubicin resistance ABC transporter ATP-binding subunit.
 
 
  0.832
RMCC_4564
ABC transporter efflux protein, DrrB family prot ein.
  
  
  0.714
RMCC_1158
ABC transporter ATP-binding protein.
 
 
  0.665
RMCC_5352
Multidrug ABC transporter ATPase.
 
 
  0.624
RMCC_4498
Putative short-chain dehydrogenase/reductase.
       0.615
RMCC_5032
ABC transporter ATP-binding protein.
 
 
  0.593
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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