STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4539Transcriptional regulator. (225 aa)    
Predicted Functional Partners:
RMCC_4540
Amidohydrolase.
       0.757
RMCC_4143
Phenylacetic acid-responsive transcriptional repressor.
   
    0.655
RMCC_4541
Fatty acid desaturase type 2.
       0.591
RMCC_4538
Extracellular solute-binding protein.
   
   0.560
RMCC_4537
Truncated polar amino acid ABC transporter.
       0.516
RMCC_1045
Transcriptional regulator.
  
     0.497
RMCC_1623
TetR family transcriptional regulator.
  
     0.483
RMCC_4536
Glutamine transport ATP-binding protein GlnQ.
       0.483
RMCC_6151
Putative uncharacterized protein.
  
     0.414
RMCC_4535
Gamma-glutamyltranspeptidase.
       0.401
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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