STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4540Amidohydrolase. (539 aa)    
Predicted Functional Partners:
RMCC_4539
Transcriptional regulator.
       0.757
RMCC_4541
Fatty acid desaturase type 2.
       0.603
RMCC_2978
Protein affecting phage T7 exclusion by the F plasmid.
  
    0.592
RMCC_4537
Truncated polar amino acid ABC transporter.
       0.506
RMCC_4538
Extracellular solute-binding protein.
       0.506
RMCC_4536
Glutamine transport ATP-binding protein GlnQ.
  
    0.481
RMCC_4535
Gamma-glutamyltranspeptidase.
 
     0.468
RMCC_4533
O-succinylbenzoate synthase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.424
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.