STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4552ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component. (383 aa)    
Predicted Functional Partners:
RMCC_4550
ABC transporter permease.
 
 
 0.968
RMCC_0482
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 
 0.950
RMCC_4551
ABC transporter ATP-binding protein.
 
 
 0.878
RMCC_4553
Dioxygenase 2OG-Fe(II) oxygenase superfamily protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
 
     0.869
ssuB
Nitrate/sulfonate/bicarbonate ABC transporter ATPase.
 
 
 0.865
RMCC_4547
Cytosine deaminase.
 
     0.852
RMCC_3268
Sulfonate ABC transporter ATP-binding protein.
  
 
 0.701
RMCC_5266
ABC transporter.
  
 
 0.701
RMCC_5386
ABC transporter ATP-binding protein.
  
 
 0.699
RMCC_0917
Putative conserved integral membrane alanine and leucine rich protein.
  
 
 0.656
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.