STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4553Dioxygenase 2OG-Fe(II) oxygenase superfamily protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (321 aa)    
Predicted Functional Partners:
RMCC_4552
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component.
 
     0.869
RMCC_6372
Polyketide synthase pks13.
    
 0.651
RMCC_2548
Uncharacterized protein.
   
 
  0.554
RMCC_2549
Amino acid ABC transporter permease protein.
   
 
  0.554
RMCC_4428
Glutamine ABC transporter permease.
   
 
  0.554
RMCC_4549
Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family.
 
    
0.553
RMCC_1957
Peptide synthetase.
     
 0.552
RMCC_4550
ABC transporter permease.
 
     0.510
pks5-2
Polyketide synthase pks5.
    
 0.486
RMCC_4547
Cytosine deaminase.
 
     0.485
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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