STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4558Agmatinase; Belongs to the arginase family. (323 aa)    
Predicted Functional Partners:
RMCC_3779
Orn/Lys/Arg decarboxylase.
 
  
 0.885
RMCC_0641
Agmatine deiminase; Belongs to the agmatine deiminase family.
    
 0.875
RMCC_4561
Amino acid permease.
 
  
 0.818
RMCC_5083
Agmatinase; Belongs to the arginase family.
  
  
 
0.787
RMCC_5024
Delta-1-pyrroline-5-carboxylate dehydrogenase/L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.784
RMCC_3237
Spermine synthase.
  
 
 0.781
RMCC_4557
Polysaccharide deacetylase.
       0.780
RMCC_0226
Urea amidolyase.
  
 
 0.776
RMCC_4559
3-oxoacyl-ACP reductase.
       0.773
RMCC_4560
Short-chain dehydrogenase.
       0.773
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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