STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4560Short-chain dehydrogenase. (232 aa)    
Predicted Functional Partners:
RMCC_2496
Fatty acid synthase.
  
 0.963
RMCC_4559
3-oxoacyl-ACP reductase.
 
  
 
0.943
RMCC_0709
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.815
RMCC_4557
Polysaccharide deacetylase.
       0.793
RMCC_4561
Amino acid permease.
       0.791
RMCC_4558
Agmatinase; Belongs to the arginase family.
       0.773
RMCC_6372
Polyketide synthase pks13.
  
 0.771
pks5-2
Polyketide synthase pks5.
  
 0.760
RMCC_6601
Beta-ketoacyl synthase.
  
 0.760
RMCC_1610
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.734
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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