STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4576AzlC family protein. (228 aa)    
Predicted Functional Partners:
RMCC_4575
Branched-chain amino acid transport.
 
 
 0.999
RMCC_4574
GNAT family acetyltransferase.
     
 0.787
RMCC_5132
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
  0.700
RMCC_5131
Branched chain amino acid transport permease; Belongs to the binding-protein-dependent transport system permease family.
 
  
  0.639
RMCC_5130
Branched-chain amino acid ABC transporter ATPase.
 
  
  0.604
RMCC_4577
uracil-DNA glycosylase.
       0.560
RMCC_5133
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
  
 0.553
RMCC_1578
ABC transporter.
    
  0.530
RMCC_5430
Branched-chain amino acid ABC transporter transmembrane protein; Belongs to the binding-protein-dependent transport system permease family.
    
  0.530
RMCC_5431
Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
    
  0.530
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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