Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4584Esterase. (488 aa)    
Predicted Functional Partners:
RMCC_6372
Polyketide synthase pks13.
 
 
 0.745
pks5-2
Polyketide synthase pks5.
  
 0.666
RMCC_6601
Beta-ketoacyl synthase.
  
 0.666
RMCC_6365
Transmembrane protein.
 
  
  0.636
RMCC_2167
Beta-lactamase class A.
  
     0.623
RMCC_0693
Alcohol dehydrogenase.
  
  0.619
RMCC_1496
Zinc-type alcohol dehydrogenase NAD dependent adhB.
  
  0.619
RMCC_4042
Mycothiol-dependent formaldehyde dehydrogenase.
  
  0.619
RMCC_6070
Alcohol dehydrogenase.
  
  0.619
RMCC_6149
Alcohol dehydrogenase.
  
  0.619
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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