STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4595Transmembrane protein. (517 aa)    
Predicted Functional Partners:
RMCC_4594
Cytochrome c assembly protein.
 
  
 0.987
RMCC_4596
Cytochrome c biogenesis protein transmembrane region.
 
  
 0.957
RMCC_4597
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
 
  
 0.913
RMCC_4598
Phosphoglycerate mutase.
 
    0.846
RMCC_0111
Cytochrome c biogenesis protein transmembrane region.
 
  
 0.818
RMCC_4593
ATPase.
 
     0.813
RMCC_0273
Ubiquinol-cytochrome C reductase qcrC.
 
  
 0.791
hemL
Glutamate-1-semialdehyde aminotransferase.
  
  
 0.790
RMCC_0268
Integral membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.765
RMCC_0272
Rieske iron-sulfur protein qcrA.
  
     0.761
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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