STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4607NAD-dependent aldehyde dehydrogenase. (456 aa)    
Predicted Functional Partners:
RMCC_3883
Oxidoreductase subunit alpha.
   
 0.913
sdhA
Succinate dehydrogenase flavoprotein subunit.
   
  0.909
RMCC_6067
Succinate dehydrogenase flavoprotein subunit.
   
  0.909
fumC
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
    
 0.906
mqo
Malate:quinone oxidoreductase.
   
 
 0.896
sdhB
Succinate dehydrogenase iron-sulfur protein.
   
 
 0.894
RMCC_6068
Succinate dehydrogenase iron-sulfur subunit.
   
 
 0.894
RMCC_6065
Succinate dehydrogenase.
   
 
  0.892
RMCC_6805
Aldolase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.890
RMCC_6066
Succinate dehydrogenase.
   
 
  0.888
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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