STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4673Succinate-semialdehyde dehydrogenase NADP+ dependent, PutA_2; Belongs to the aldehyde dehydrogenase family. (503 aa)    
Predicted Functional Partners:
pks5-2
Polyketide synthase pks5.
  
 0.770
RMCC_6601
Beta-ketoacyl synthase.
  
 0.770
RMCC_3632
Citrate synthase I gltA1; Belongs to the citrate synthase family.
   
 0.767
RMCC_5449
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.766
RMCC_3883
Oxidoreductase subunit alpha.
   
 0.764
RMCC_3499
Type II citrate synthase; Belongs to the citrate synthase family.
   
 0.760
RMCC_3503
Citrate synthase 2; Belongs to the citrate synthase family.
   
  0.757
RMCC_6067
Succinate dehydrogenase flavoprotein subunit.
   
 0.756
sdhA
Succinate dehydrogenase flavoprotein subunit.
   
  0.753
RMCC_1077
Aminotransferase class-III.
  
 0.746
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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