Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RMCC_0101 | RMCC_0699 | TetR-family transcriptional regulator. | Helix-turn-helix domain-containing protein. | 0.431 |
RMCC_0101 | RMCC_1998 | TetR-family transcriptional regulator. | Transcriptional regulatory protein. | 0.570 |
RMCC_0101 | RMCC_4395 | TetR-family transcriptional regulator. | DNA-binding transcriptional activator. | 0.504 |
RMCC_0101 | RMCC_4686 | TetR-family transcriptional regulator. | TetR family transcriptional regulator. | 0.756 |
RMCC_0101 | RMCC_4877 | TetR-family transcriptional regulator. | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | 0.503 |
RMCC_0101 | RMCC_6340 | TetR-family transcriptional regulator. | Transcriptional regulator. | 0.459 |
RMCC_0699 | RMCC_0101 | Helix-turn-helix domain-containing protein. | TetR-family transcriptional regulator. | 0.431 |
RMCC_0699 | RMCC_3320 | Helix-turn-helix domain-containing protein. | Transcriptional regulator. | 0.649 |
RMCC_0699 | RMCC_4120 | Helix-turn-helix domain-containing protein. | Transcriptional regulator. | 0.623 |
RMCC_0699 | RMCC_4395 | Helix-turn-helix domain-containing protein. | DNA-binding transcriptional activator. | 0.639 |
RMCC_0699 | RMCC_4686 | Helix-turn-helix domain-containing protein. | TetR family transcriptional regulator. | 0.591 |
RMCC_0699 | RMCC_6340 | Helix-turn-helix domain-containing protein. | Transcriptional regulator. | 0.643 |
RMCC_1998 | RMCC_0101 | Transcriptional regulatory protein. | TetR-family transcriptional regulator. | 0.570 |
RMCC_1998 | RMCC_3320 | Transcriptional regulatory protein. | Transcriptional regulator. | 0.575 |
RMCC_1998 | RMCC_3995 | Transcriptional regulatory protein. | TetR family transcriptional regulator. | 0.779 |
RMCC_1998 | RMCC_4120 | Transcriptional regulatory protein. | Transcriptional regulator. | 0.791 |
RMCC_1998 | RMCC_4395 | Transcriptional regulatory protein. | DNA-binding transcriptional activator. | 0.823 |
RMCC_1998 | RMCC_4686 | Transcriptional regulatory protein. | TetR family transcriptional regulator. | 0.752 |
RMCC_1998 | RMCC_4877 | Transcriptional regulatory protein. | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | 0.791 |
RMCC_1998 | RMCC_6340 | Transcriptional regulatory protein. | Transcriptional regulator. | 0.754 |
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