Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCC_4760 | RMCC_4762 | RMCC_4760 | RMCC_4762 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Uncharacterized protein. | 0.400 |
RMCC_4760 | RMCC_4763 | RMCC_4760 | RMCC_4763 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.806 |
RMCC_4760 | RMCC_4764 | RMCC_4760 | RMCC_4764 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Amino acid permease-associated region. | 0.412 |
RMCC_4760 | RMCC_4765 | RMCC_4760 | RMCC_4765 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Phosphotransferase enzyme family protein. | 0.566 |
RMCC_4760 | RMCC_5024 | RMCC_4760 | RMCC_5024 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Delta-1-pyrroline-5-carboxylate dehydrogenase/L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.727 |
RMCC_4760 | fumC | RMCC_4760 | RMCC_4351 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.772 |
RMCC_4762 | RMCC_4760 | RMCC_4762 | RMCC_4760 | Uncharacterized protein. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.400 |
RMCC_4762 | RMCC_4763 | RMCC_4762 | RMCC_4763 | Uncharacterized protein. | Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.777 |
RMCC_4762 | RMCC_4764 | RMCC_4762 | RMCC_4764 | Uncharacterized protein. | Amino acid permease-associated region. | 0.774 |
RMCC_4762 | RMCC_4765 | RMCC_4762 | RMCC_4765 | Uncharacterized protein. | Phosphotransferase enzyme family protein. | 0.451 |
RMCC_4763 | RMCC_4760 | RMCC_4763 | RMCC_4760 | Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.806 |
RMCC_4763 | RMCC_4762 | RMCC_4763 | RMCC_4762 | Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Uncharacterized protein. | 0.777 |
RMCC_4763 | RMCC_4764 | RMCC_4763 | RMCC_4764 | Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Amino acid permease-associated region. | 0.827 |
RMCC_4763 | RMCC_4765 | RMCC_4763 | RMCC_4765 | Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Phosphotransferase enzyme family protein. | 0.883 |
RMCC_4763 | RMCC_5024 | RMCC_4763 | RMCC_5024 | Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Delta-1-pyrroline-5-carboxylate dehydrogenase/L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.751 |
RMCC_4763 | RMCC_6207 | RMCC_4763 | RMCC_6207 | Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Glutamate decarboxylase gadB; Belongs to the group II decarboxylase family. | 0.742 |
RMCC_4763 | RMCC_6293 | RMCC_4763 | RMCC_6293 | Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Ferredoxin-dependent glutamate synthase [NADPH] large subunit gltB. | 0.725 |
RMCC_4763 | fumC | RMCC_4763 | RMCC_4351 | Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.743 |
RMCC_4763 | gcvP | RMCC_4763 | RMCC_2808 | Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.716 |
RMCC_4763 | gltB | RMCC_4763 | RMCC_0328 | Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Glutamate synthase (NADPH/NADH) large chain. | 0.725 |
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