STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4801Beta-mannanase; Belongs to the glycosyl hydrolase 26 family. (305 aa)    
Predicted Functional Partners:
RMCC_3900
Ribokinase sugar kinase.
     
 0.751
RMCC_2541
Glycoside hydrolase family 10.
     
 0.673
RMCC_0533
Cellulase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.639
RMCC_4804
Cellulose synthase.
  
  0.594
RMCC_1624
Endoglycoceramidase.
    
 0.582
RMCC_2733
PKD domain containing protein.
     
 0.576
RMCC_5319
PKD domain-containing protein.
     
 0.576
RMCC_3133
UDP-glucose 6-dehydrogenase.
    
  0.537
RMCC_0869
Cellulase celA1; Belongs to the glycosyl hydrolase family 6.
    
 0.535
RMCC_0848
Kinase, pfkB family.
     
 0.521
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.