STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4847Low-density liporeceptor YWTD repeat protein. (305 aa)    
Predicted Functional Partners:
RMCC_4846
3-hydroxybutyryl-CoA dehydrogenase.
     0.978
RMCC_4696
Peptidase M12A astacin.
  
  0.771
RMCC_4934
ESX-4 secretion system protein EccD4.
  
 
   0.748
RMCC_4365
Thioredoxin domain protein.
  
 
   0.702
RMCC_4936
ESX-2 secretion system protein EccE2.
  
 
   0.686
RMCC_3749
Type VII secretion integral membrane protein Ecc D.
  
 
   0.683
RMCC_4238
Cutinase Cut4; Catalyzes the hydrolysis of cutin, a polyester that forms the structure of plant cuticle.
  
 
  0.669
cut1
Cutinase Cut1; Catalyzes the hydrolysis of cutin, a polyester that forms the structure of plant cuticle.
  
  
  0.660
RMCC_4198
Cutinase Cut1; Catalyzes the hydrolysis of cutin, a polyester that forms the structure of plant cuticle.
  
  
  0.641
RMCC_1624
Endoglycoceramidase.
    
  0.635
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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