STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4906Uncharacterized protein. (221 aa)    
Predicted Functional Partners:
RMCC_4904
Probable L-aspartate dehydrogenase.
 
     0.806
RMCC_4905
Short-chain dehydrogenase/reductase SDR.
    
  0.791
RMCC_4900
Polysaccharide deacetylase.
 
     0.725
RMCC_3392
N-acetyl glucosamine deacetylase.
 
  
 0.723
RMCC_4907
Cytosine permease; Belongs to the purine-cytosine permease (2.A.39) family.
       0.709
RMCC_4903
Endoribonuclease L-PSP.
       0.697
RMCC_4899
Transcriptional regulator.
       0.691
RMCC_4901
Unnamed protein product.
       0.689
RMCC_4902
Putative Glutamyl-tRNA(Gln) amidotransferase subunit A.
       0.689
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
    
  0.647
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.