Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4908Conserved protein of unknown function. (242 aa)    
Predicted Functional Partners:
RMCC_4909
Hypothetical protein.
 
     0.913
RMCC_5617
Transcriptional regulatory protein.
 
 
 0.644
RMCC_0566
GAF sensor signal transduction histidine kinase.
  
 0.627
RMCC_3334
GAF sensor signal transduction histidine kinase.
  
 0.627
RMCC_4251
Two-component sensor histidine kinase.
  
 0.582
RMCC_0345
Family 3 adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
  
 0.554
RMCC_5714
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.526
RMCC_2167
Beta-lactamase class A.
  
     0.493
RMCC_0341
Histidine kinase.
   
  0.476
RMCC_1148
Two component signal transduction histidine kina se.
   
  0.476
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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