STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4927Transmembrane protein of unknown function. (577 aa)    
Predicted Functional Partners:
RMCC_4928
Hippurate hydrolase.
       0.732
RMCC_0732
Uncharacterized protein.
 
     0.697
RMCC_3188
Hypothetical protein.
  
     0.667
RMCC_1485
Hypothetical protein.
  
     0.577
RMCC_3194
Flavin-containing monoamine oxidase aofH.
  
   
 0.545
RMCC_4926
long-chain-fatty-acid--AMP ligase FadD32.
       0.543
RMCC_4925
DoxX family protein.
 
     0.510
RMCC_4929
Uncharacterized protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
       0.504
RMCC_6272
Tetr family transcriptional regulator.
  
     0.485
RMCC_5421
Polyketide cyclase/dehydrase and lipid transport.
  
     0.481
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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