STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4931Protease; Belongs to the peptidase S8 family. (448 aa)    
Predicted Functional Partners:
RMCC_4223
Cell division protein FtsK/SpoIIIE.
  
 
 0.960
RMCC_4933
DNA segregation ATPase FtsK/SpoIIIE.
 
 
 0.940
RMCC_4934
ESX-4 secretion system protein EccD4.
 
 
 0.928
RMCC_4224
Uncharacterized protein.
 
  
 0.921
RMCC_3316
Type VII secretion protein EccB, Actinobacterial.
  
 0.919
RMCC_4222
Type VII secretion-associated protein, Rv3446c f amily, C-terminal domain protein.
  
 
 0.866
RMCC_4932
Uncharacterized protein.
 
    0.865
RMCC_4935
ESX-1 secretion system protein EccB1.
 
 0.825
RMCC_3749
Type VII secretion integral membrane protein Ecc D.
  
 
 0.802
RMCC_4226
Uncharacterized protein.
 
 0.778
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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