STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4960AraC family transcriptional regulator. (318 aa)    
Predicted Functional Partners:
RMCC_4961
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase.
       0.729
RMCC_4959
Integral membrane protein.
 
    0.645
RMCC_0793
AraC family transcriptional regulator.
 
   0.556
RMCC_4962
NAD-dependent epimerase/dehydratase.
  
    0.523
RMCC_2602
Ada regulatory protein alkA.
  
 
  0.501
RMCC_0348
Transcriptional regulator, AraC family.
 
   0.495
RMCC_5484
AraC family transcriptional regulator.
 
  
 
0.466
RMCC_0735
Helix-turn-helix domain-containing protein.
 
   0.462
RMCC_5524
AraC family transcriptional regulator.
 
  
 
0.461
RMCC_4963
Abortive infection protein.
       0.455
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.