STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4980Pyridoxamine 5'-phosphate oxidase-like protein. (147 aa)    
Predicted Functional Partners:
RMCC_4981
Hypothetical protein.
       0.808
RMCC_3367
PPOX class F420-dependent protein.
  
   
 0.704
RMCC_4483
Pyridoxamine 5'-phosphate oxidase-like protein.
  
   
 0.604
RMCC_4979
Pyridoxamine 5'-phosphate oxidase family protein.
       0.587
RMCC_4978
O-methyltransferase domain-containing protein.
       0.514
RMCC_3342
Deazaflavin-dependent nitroreductase family protein.
  
   
 0.499
RMCC_2771
Uncharacterized protein.
  
    0.489
RMCC_5099
CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.489
RMCC_0318
NAD-dependent nucleoside-diphosphate sugar epimerase.
  
    0.432
RMCC_5943
LPPG:FO 2-phospho-L-lactate transferase.
  
  
  0.430
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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