STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_4987Metal dependent phosphohydrolase. (207 aa)    
Predicted Functional Partners:
RMCC_4989
Response regulator receiver domain-containing protein.
       0.759
RMCC_4988
NADPH:quinone reductase related Zn-dependent oxidoreductase.
       0.757
RMCC_4986
Cell entry (mce) related family protein.
       0.658
ribBA
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.637
RMCC_4990
Regulatory protein LuxR.
 
     0.502
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
     
 0.454
RMCC_6647
Isoflavone reductase.
  
     0.453
RMCC_4984
solute:Na+ symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.426
RMCC_4985
Integral membrane protein.
       0.426
RMCC_4477
NAD-dependent epimerase/dehydratase.
  
     0.420
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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