STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_5076Beta-lactamase class B. (228 aa)    
Predicted Functional Partners:
uvrA-2
Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.772
RMCC_5437
Glyoxalase II.
  
  
 
0.708
RMCC_0072
Molybdopterin biosynthesis-like protein MoeZ.
 
 0.671
RMCC_6336
Rhodanese domain-containing protein.
  
  0.534
pks5-2
Polyketide synthase pks5.
   
 0.527
RMCC_6601
Beta-ketoacyl synthase.
   
 0.527
RMCC_1013
Polyketide synthetase mbtD.
   
 0.504
RMCC_5617
Transcriptional regulatory protein.
    
   0.489
RMCC_5593
formamidopyrimidine-DNA glycosylase; Belongs to the FPG family.
      
 0.481
RMCC_0120
Zn-dependent hydrolase.
  
 
0.460
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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