STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_5179Uncharacterized protein. (208 aa)    
Predicted Functional Partners:
RMCC_4738
Alpha/beta hydrolase superfamily enzyme, predicted hydrolase.
    
 0.906
RMCC_6578
Uncharacterized protein.
  
     0.619
RMCC_1763
Site-specific recombinase, phage integrase famil y.
  
     0.554
RMCC_5180
Cutinase.
       0.498
RMCC_5178
Ribosome-associated heat shock protein Hsp15.
       0.458
RMCC_4204
Peptidase M48, Ste24p.
    
  0.431
RMCC_5459
TetR family transcriptional regulator.
  
     0.422
RMCC_5196
Zn-dependent hydrolase, including glyoxylase.
  
     0.417
RMCC_3343
Rieske (2Fe-2S) domain-containing protein.
  
     0.403
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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