Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCC_2036 | RMCC_2216 | RMCC_2036 | RMCC_2216 | Allantoinase. | Predicted xylanase/chitin deacetylase protein. | 0.578 |
RMCC_2036 | RMCC_4900 | RMCC_2036 | RMCC_4900 | Allantoinase. | Polysaccharide deacetylase. | 0.578 |
RMCC_2036 | RMCC_5251 | RMCC_2036 | RMCC_5251 | Allantoinase. | Amidase. | 0.752 |
RMCC_2036 | RMCC_5253 | RMCC_2036 | RMCC_5253 | Allantoinase. | Phenylhydantoinase. | 0.786 |
RMCC_2036 | RMCC_5254 | RMCC_2036 | RMCC_5254 | Allantoinase. | Uracil-xanthine permease. | 0.614 |
RMCC_2036 | pyrC | RMCC_2036 | RMCC_1226 | Allantoinase. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.793 |
RMCC_2036 | pyrD | RMCC_2036 | RMCC_3058 | Allantoinase. | Dihydroorotate dehydrogenase 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.946 |
RMCC_2216 | RMCC_2036 | RMCC_2216 | RMCC_2036 | Predicted xylanase/chitin deacetylase protein. | Allantoinase. | 0.578 |
RMCC_2216 | RMCC_5251 | RMCC_2216 | RMCC_5251 | Predicted xylanase/chitin deacetylase protein. | Amidase. | 0.632 |
RMCC_2216 | RMCC_5253 | RMCC_2216 | RMCC_5253 | Predicted xylanase/chitin deacetylase protein. | Phenylhydantoinase. | 0.595 |
RMCC_4900 | RMCC_2036 | RMCC_4900 | RMCC_2036 | Polysaccharide deacetylase. | Allantoinase. | 0.578 |
RMCC_4900 | RMCC_5251 | RMCC_4900 | RMCC_5251 | Polysaccharide deacetylase. | Amidase. | 0.624 |
RMCC_4900 | RMCC_5253 | RMCC_4900 | RMCC_5253 | Polysaccharide deacetylase. | Phenylhydantoinase. | 0.595 |
RMCC_5251 | RMCC_2036 | RMCC_5251 | RMCC_2036 | Amidase. | Allantoinase. | 0.752 |
RMCC_5251 | RMCC_2216 | RMCC_5251 | RMCC_2216 | Amidase. | Predicted xylanase/chitin deacetylase protein. | 0.632 |
RMCC_5251 | RMCC_4900 | RMCC_5251 | RMCC_4900 | Amidase. | Polysaccharide deacetylase. | 0.624 |
RMCC_5251 | RMCC_5252 | RMCC_5251 | RMCC_5252 | Amidase. | Methylenetetrahydromethanopterin reductase. | 0.705 |
RMCC_5251 | RMCC_5253 | RMCC_5251 | RMCC_5253 | Amidase. | Phenylhydantoinase. | 0.924 |
RMCC_5251 | RMCC_5254 | RMCC_5251 | RMCC_5254 | Amidase. | Uracil-xanthine permease. | 0.602 |
RMCC_5251 | argC | RMCC_5251 | RMCC_5050 | Amidase. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.675 |
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