Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RMCC_0802 | RMCC_1299 | 5,10-methylenetetrahydromethanopterin reductase. | F420-dependent oxidoreductase, MSMEG_4879 family. | 0.663 |
RMCC_0802 | RMCC_5252 | 5,10-methylenetetrahydromethanopterin reductase. | Methylenetetrahydromethanopterin reductase. | 0.708 |
RMCC_0802 | RMCC_5944 | 5,10-methylenetetrahydromethanopterin reductase. | F420-0--gamma-glutamyl ligase. | 0.434 |
RMCC_0802 | RMCC_6608 | 5,10-methylenetetrahydromethanopterin reductase. | Luciferase family protein. | 0.657 |
RMCC_1299 | RMCC_0802 | F420-dependent oxidoreductase, MSMEG_4879 family. | 5,10-methylenetetrahydromethanopterin reductase. | 0.663 |
RMCC_1299 | RMCC_3342 | F420-dependent oxidoreductase, MSMEG_4879 family. | Deazaflavin-dependent nitroreductase family protein. | 0.698 |
RMCC_1299 | RMCC_5200 | F420-dependent oxidoreductase, MSMEG_4879 family. | Uncharacterized protein. | 0.619 |
RMCC_1299 | RMCC_5252 | F420-dependent oxidoreductase, MSMEG_4879 family. | Methylenetetrahydromethanopterin reductase. | 0.810 |
RMCC_1299 | RMCC_5944 | F420-dependent oxidoreductase, MSMEG_4879 family. | F420-0--gamma-glutamyl ligase. | 0.803 |
RMCC_3342 | RMCC_1299 | Deazaflavin-dependent nitroreductase family protein. | F420-dependent oxidoreductase, MSMEG_4879 family. | 0.698 |
RMCC_3342 | RMCC_5252 | Deazaflavin-dependent nitroreductase family protein. | Methylenetetrahydromethanopterin reductase. | 0.621 |
RMCC_3342 | RMCC_5944 | Deazaflavin-dependent nitroreductase family protein. | F420-0--gamma-glutamyl ligase. | 0.661 |
RMCC_3342 | RMCC_6608 | Deazaflavin-dependent nitroreductase family protein. | Luciferase family protein. | 0.530 |
RMCC_5200 | RMCC_1299 | Uncharacterized protein. | F420-dependent oxidoreductase, MSMEG_4879 family. | 0.619 |
RMCC_5200 | RMCC_5252 | Uncharacterized protein. | Methylenetetrahydromethanopterin reductase. | 0.608 |
RMCC_5200 | RMCC_5944 | Uncharacterized protein. | F420-0--gamma-glutamyl ligase. | 0.819 |
RMCC_5200 | RMCC_6608 | Uncharacterized protein. | Luciferase family protein. | 0.469 |
RMCC_5251 | RMCC_5252 | Amidase. | Methylenetetrahydromethanopterin reductase. | 0.705 |
RMCC_5251 | RMCC_5253 | Amidase. | Phenylhydantoinase. | 0.924 |
RMCC_5251 | RMCC_5254 | Amidase. | Uracil-xanthine permease. | 0.602 |
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