Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RMCC_0553 | RMCC_5315 | Two component LuxR family transcriptional regulator. | Two-component system sensor kinase. | 0.891 |
RMCC_0553 | RMCC_5930 | Two component LuxR family transcriptional regulator. | Two component LuxR family transcriptional regulator. | 0.730 |
RMCC_0553 | RMCC_6750 | Two component LuxR family transcriptional regulator. | Nitrate/nitrite response transcriptional regulatory protein narL. | 0.595 |
RMCC_1147 | RMCC_5315 | Two-component system response regulator. | Two-component system sensor kinase. | 0.894 |
RMCC_1147 | RMCC_5930 | Two-component system response regulator. | Two component LuxR family transcriptional regulator. | 0.490 |
RMCC_1147 | RMCC_6750 | Two-component system response regulator. | Nitrate/nitrite response transcriptional regulatory protein narL. | 0.569 |
RMCC_2020 | RMCC_5315 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | Two-component system sensor kinase. | 0.907 |
RMCC_2020 | RMCC_5930 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | Two component LuxR family transcriptional regulator. | 0.538 |
RMCC_2020 | RMCC_6231 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | Uncharacterized protein. | 0.772 |
RMCC_2020 | RMCC_6750 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | Nitrate/nitrite response transcriptional regulatory protein narL. | 0.585 |
RMCC_3333 | RMCC_5315 | Two component LuxR family transcriptional regulator. | Two-component system sensor kinase. | 0.891 |
RMCC_3333 | RMCC_5930 | Two component LuxR family transcriptional regulator. | Two component LuxR family transcriptional regulator. | 0.899 |
RMCC_3333 | RMCC_6750 | Two component LuxR family transcriptional regulator. | Nitrate/nitrite response transcriptional regulatory protein narL. | 0.593 |
RMCC_3838 | RMCC_5315 | LuxR family two component transcriptional regulator. | Two-component system sensor kinase. | 0.902 |
RMCC_3838 | RMCC_5930 | LuxR family two component transcriptional regulator. | Two component LuxR family transcriptional regulator. | 0.511 |
RMCC_3838 | RMCC_6750 | LuxR family two component transcriptional regulator. | Nitrate/nitrite response transcriptional regulatory protein narL. | 0.554 |
RMCC_4258 | RMCC_5315 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | Two-component system sensor kinase. | 0.893 |
RMCC_4258 | RMCC_5930 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | Two component LuxR family transcriptional regulator. | 0.507 |
RMCC_4258 | RMCC_6750 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | Nitrate/nitrite response transcriptional regulatory protein narL. | 0.597 |
RMCC_5314 | RMCC_5315 | Two-component system response regulator. | Two-component system sensor kinase. | 0.983 |
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