Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RMCC_1081 | RMCC_5129 | Regulatory protein. | Branched-chain amino acid ABC transporter ATPase. | 0.766 |
RMCC_1081 | RMCC_5130 | Regulatory protein. | Branched-chain amino acid ABC transporter ATPase. | 0.772 |
RMCC_1081 | RMCC_5132 | Regulatory protein. | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | 0.838 |
RMCC_1081 | RMCC_5430 | Regulatory protein. | Branched-chain amino acid ABC transporter transmembrane protein; Belongs to the binding-protein-dependent transport system permease family. | 0.959 |
RMCC_1081 | RMCC_5431 | Regulatory protein. | Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. | 0.965 |
RMCC_1081 | RMCC_5432 | Regulatory protein. | ABC transporter ATP-binding protein. | 0.915 |
RMCC_1081 | RMCC_5433 | Regulatory protein. | ABC transporter-like protein. | 0.910 |
RMCC_5129 | RMCC_1081 | Branched-chain amino acid ABC transporter ATPase. | Regulatory protein. | 0.766 |
RMCC_5129 | RMCC_5130 | Branched-chain amino acid ABC transporter ATPase. | Branched-chain amino acid ABC transporter ATPase. | 0.994 |
RMCC_5129 | RMCC_5132 | Branched-chain amino acid ABC transporter ATPase. | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | 0.997 |
RMCC_5129 | RMCC_5429 | Branched-chain amino acid ABC transporter ATPase. | Extracellular ligand-binding receptor. | 0.820 |
RMCC_5129 | RMCC_5430 | Branched-chain amino acid ABC transporter ATPase. | Branched-chain amino acid ABC transporter transmembrane protein; Belongs to the binding-protein-dependent transport system permease family. | 0.958 |
RMCC_5129 | RMCC_5431 | Branched-chain amino acid ABC transporter ATPase. | Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. | 0.970 |
RMCC_5129 | RMCC_5432 | Branched-chain amino acid ABC transporter ATPase. | ABC transporter ATP-binding protein. | 0.786 |
RMCC_5129 | RMCC_5517 | Branched-chain amino acid ABC transporter ATPase. | Putative acetamidase regulatory protein. | 0.773 |
RMCC_5129 | RMCC_6505 | Branched-chain amino acid ABC transporter ATPase. | Putative regulatory protein. | 0.770 |
RMCC_5130 | RMCC_1081 | Branched-chain amino acid ABC transporter ATPase. | Regulatory protein. | 0.772 |
RMCC_5130 | RMCC_5129 | Branched-chain amino acid ABC transporter ATPase. | Branched-chain amino acid ABC transporter ATPase. | 0.994 |
RMCC_5130 | RMCC_5132 | Branched-chain amino acid ABC transporter ATPase. | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | 0.998 |
RMCC_5130 | RMCC_5429 | Branched-chain amino acid ABC transporter ATPase. | Extracellular ligand-binding receptor. | 0.824 |
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