Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCC_0665 | RMCC_5813 | RMCC_0665 | RMCC_5813 | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | Hypothetical protein. | 0.681 |
RMCC_0665 | cysN | RMCC_0665 | RMCC_3719 | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. | 0.602 |
RMCC_0665 | metK | RMCC_0665 | RMCC_1216 | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.556 |
RMCC_1815 | RMCC_5813 | RMCC_1815 | RMCC_5813 | Gp87. | Hypothetical protein. | 0.700 |
RMCC_2246 | RMCC_5813 | RMCC_2246 | RMCC_5813 | Magnesium chelatase. | Hypothetical protein. | 0.716 |
RMCC_5813 | RMCC_0665 | RMCC_5813 | RMCC_0665 | Hypothetical protein. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.681 |
RMCC_5813 | RMCC_1815 | RMCC_5813 | RMCC_1815 | Hypothetical protein. | Gp87. | 0.700 |
RMCC_5813 | RMCC_2246 | RMCC_5813 | RMCC_2246 | Hypothetical protein. | Magnesium chelatase. | 0.716 |
RMCC_5813 | RMCC_5814 | RMCC_5813 | RMCC_5814 | Hypothetical protein. | Gp52. | 0.625 |
RMCC_5813 | RMCC_5815 | RMCC_5813 | RMCC_5815 | Hypothetical protein. | Uncharacterized protein. | 0.625 |
RMCC_5813 | RMCC_5816 | RMCC_5813 | RMCC_5816 | Hypothetical protein. | Gp62. | 0.625 |
RMCC_5813 | RMCC_5818 | RMCC_5813 | RMCC_5818 | Hypothetical protein. | Gp50. | 0.629 |
RMCC_5813 | RMCC_5821 | RMCC_5813 | RMCC_5821 | Hypothetical protein. | Uncharacterized protein. | 0.628 |
RMCC_5813 | cysN | RMCC_5813 | RMCC_3719 | Hypothetical protein. | Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. | 0.644 |
RMCC_5813 | metK | RMCC_5813 | RMCC_1216 | Hypothetical protein. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.741 |
RMCC_5814 | RMCC_5813 | RMCC_5814 | RMCC_5813 | Gp52. | Hypothetical protein. | 0.625 |
RMCC_5814 | RMCC_5815 | RMCC_5814 | RMCC_5815 | Gp52. | Uncharacterized protein. | 0.773 |
RMCC_5814 | RMCC_5816 | RMCC_5814 | RMCC_5816 | Gp52. | Gp62. | 0.773 |
RMCC_5814 | RMCC_5818 | RMCC_5814 | RMCC_5818 | Gp52. | Gp50. | 0.773 |
RMCC_5814 | RMCC_5821 | RMCC_5814 | RMCC_5821 | Gp52. | Uncharacterized protein. | 0.773 |
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