STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_5915Type 11 methyltransferase. (288 aa)    
Predicted Functional Partners:
pks5-2
Polyketide synthase pks5.
   
 0.755
RMCC_6601
Beta-ketoacyl synthase.
   
 0.755
RMCC_5931
Signal transduction histidine kinase.
  
     0.751
RMCC_5914
Mycofactocin system RPExFGAL protein.
 
     0.710
RMCC_5933
VWA containing CoxE-like protein.
 
     0.708
RMCC_6372
Polyketide synthase pks13.
    
 0.684
RMCC_5935
Iron-containing alcohol dehydrogenase.
 
     0.676
RMCC_1013
Polyketide synthetase mbtD.
   
 0.651
RMCC_2769
Uncharacterized protein.
  
     0.646
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.636
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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