Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RMCC_0463 | RMCC_3541 | Septum formation initiator. | Transmembrane domain of unknown function. | 0.764 |
RMCC_0463 | RMCC_4689 | Septum formation initiator. | Type III restriction enzyme, res subunit. | 0.442 |
RMCC_0463 | RMCC_5940 | Septum formation initiator. | Protein of unknown function. | 0.622 |
RMCC_1682 | RMCC_5940 | Conserved membrane protein. | Protein of unknown function. | 0.755 |
RMCC_2375 | RMCC_4039 | Hypothetical protein. | Protein of unknown function. | 0.743 |
RMCC_2375 | RMCC_5940 | Hypothetical protein. | Protein of unknown function. | 0.562 |
RMCC_3541 | RMCC_0463 | Transmembrane domain of unknown function. | Septum formation initiator. | 0.764 |
RMCC_3541 | RMCC_5940 | Transmembrane domain of unknown function. | Protein of unknown function. | 0.713 |
RMCC_4039 | RMCC_2375 | Protein of unknown function. | Hypothetical protein. | 0.743 |
RMCC_4039 | RMCC_4689 | Protein of unknown function. | Type III restriction enzyme, res subunit. | 0.525 |
RMCC_4039 | RMCC_5940 | Protein of unknown function. | Protein of unknown function. | 0.697 |
RMCC_4689 | RMCC_0463 | Type III restriction enzyme, res subunit. | Septum formation initiator. | 0.442 |
RMCC_4689 | RMCC_4039 | Type III restriction enzyme, res subunit. | Protein of unknown function. | 0.525 |
RMCC_4689 | RMCC_5940 | Type III restriction enzyme, res subunit. | Protein of unknown function. | 0.606 |
RMCC_5937 | RMCC_5938 | Mannose-6-phosphate isomerase manA. | TobH protein. | 0.987 |
RMCC_5937 | RMCC_5939 | Mannose-6-phosphate isomerase manA. | Phosphomannomutase/phosphoglucomutase. | 0.992 |
RMCC_5937 | RMCC_5940 | Mannose-6-phosphate isomerase manA. | Protein of unknown function. | 0.640 |
RMCC_5937 | RMCC_5941 | Mannose-6-phosphate isomerase manA. | Exonuclease I. | 0.523 |
RMCC_5938 | RMCC_5937 | TobH protein. | Mannose-6-phosphate isomerase manA. | 0.987 |
RMCC_5938 | RMCC_5939 | TobH protein. | Phosphomannomutase/phosphoglucomutase. | 0.971 |
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