Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RMCC_3194 | RMCC_6131 | Flavin-containing monoamine oxidase aofH. | Universal stress protein UspA-like protein. | 0.418 |
RMCC_3589 | RMCC_3590 | Hypothetical protein. | Penicillin-binding protein. | 0.915 |
RMCC_3589 | RMCC_6131 | Hypothetical protein. | Universal stress protein UspA-like protein. | 0.617 |
RMCC_3590 | RMCC_3589 | Penicillin-binding protein. | Hypothetical protein. | 0.915 |
RMCC_3590 | RMCC_6131 | Penicillin-binding protein. | Universal stress protein UspA-like protein. | 0.454 |
RMCC_4125 | RMCC_6131 | Amidinotransferase. | Universal stress protein UspA-like protein. | 0.786 |
RMCC_4569 | RMCC_4725 | Uncharacterized protein. | Uncharacterized protein. | 0.446 |
RMCC_4569 | RMCC_6131 | Uncharacterized protein. | Universal stress protein UspA-like protein. | 0.518 |
RMCC_4725 | RMCC_4569 | Uncharacterized protein. | Uncharacterized protein. | 0.446 |
RMCC_4725 | RMCC_6131 | Uncharacterized protein. | Universal stress protein UspA-like protein. | 0.409 |
RMCC_4761 | RMCC_4764 | Uncharacterized protein. | Amino acid permease-associated region. | 0.466 |
RMCC_4761 | RMCC_6131 | Uncharacterized protein. | Universal stress protein UspA-like protein. | 0.414 |
RMCC_4764 | RMCC_4761 | Amino acid permease-associated region. | Uncharacterized protein. | 0.466 |
RMCC_4764 | RMCC_6131 | Amino acid permease-associated region. | Universal stress protein UspA-like protein. | 0.415 |
RMCC_6074 | RMCC_6131 | Amino acid transporter. | Universal stress protein UspA-like protein. | 0.590 |
RMCC_6131 | RMCC_3194 | Universal stress protein UspA-like protein. | Flavin-containing monoamine oxidase aofH. | 0.418 |
RMCC_6131 | RMCC_3589 | Universal stress protein UspA-like protein. | Hypothetical protein. | 0.617 |
RMCC_6131 | RMCC_3590 | Universal stress protein UspA-like protein. | Penicillin-binding protein. | 0.454 |
RMCC_6131 | RMCC_4125 | Universal stress protein UspA-like protein. | Amidinotransferase. | 0.786 |
RMCC_6131 | RMCC_4569 | Universal stress protein UspA-like protein. | Uncharacterized protein. | 0.518 |
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