STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_6428Hypothetical protein. (174 aa)    
Predicted Functional Partners:
RMCC_6426
Osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport system permease protein proW.
       0.774
RMCC_0296
Lipoprotein lppM.
  
     0.701
RMCC_6423
Uncharacterized integral membrane protein.
       0.696
RMCC_6424
Amino acid ABC transporter substrate-binding protein.
 
     0.658
RMCC_0073
Hypothetical protein.
  
     0.638
RMCC_4648
Iron-regulated heparin binding hemagglutinin hbhA.
  
     0.637
RMCC_6425
Osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport system ATP-binding protein proV.
       0.603
RMCC_6427
Osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport system permease protein proZ.
       0.603
RMCC_1139
Uncharacterized protein.
  
     0.600
RMCC_5465
NUDIX hydrolase.
  
     0.584
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.