Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RMCC_0463 | RMCC_3526 | Septum formation initiator. | Penicillin-binding protein pbpA. | 0.409 |
RMCC_0463 | RMCC_6691 | Septum formation initiator. | ErfK/YbiS/YcfS/YnhG family protein. | 0.491 |
RMCC_1715 | RMCC_2158 | D-alanyl-D-alanine carboxypeptidase. | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | 0.978 |
RMCC_1715 | RMCC_3526 | D-alanyl-D-alanine carboxypeptidase. | Penicillin-binding protein pbpA. | 0.902 |
RMCC_1715 | RMCC_3558 | D-alanyl-D-alanine carboxypeptidase. | Hydrolase. | 0.648 |
RMCC_1715 | RMCC_3590 | D-alanyl-D-alanine carboxypeptidase. | Penicillin-binding protein. | 0.915 |
RMCC_1715 | RMCC_3842 | D-alanyl-D-alanine carboxypeptidase. | Membrane carboxypeptidase. | 0.918 |
RMCC_1715 | RMCC_5848 | D-alanyl-D-alanine carboxypeptidase. | Putative secreted chitinase. | 0.670 |
RMCC_1715 | RMCC_6691 | D-alanyl-D-alanine carboxypeptidase. | ErfK/YbiS/YcfS/YnhG family protein. | 0.736 |
RMCC_2067 | RMCC_6691 | Methionine synthase, vitamin-B12 independent. | ErfK/YbiS/YcfS/YnhG family protein. | 0.568 |
RMCC_2158 | RMCC_1715 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | D-alanyl-D-alanine carboxypeptidase. | 0.978 |
RMCC_2158 | RMCC_3526 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Penicillin-binding protein pbpA. | 0.739 |
RMCC_2158 | RMCC_3558 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Hydrolase. | 0.711 |
RMCC_2158 | RMCC_3590 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Penicillin-binding protein. | 0.744 |
RMCC_2158 | RMCC_3842 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Membrane carboxypeptidase. | 0.613 |
RMCC_2158 | RMCC_5848 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Putative secreted chitinase. | 0.418 |
RMCC_2158 | RMCC_6691 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | ErfK/YbiS/YcfS/YnhG family protein. | 0.459 |
RMCC_3526 | RMCC_0463 | Penicillin-binding protein pbpA. | Septum formation initiator. | 0.409 |
RMCC_3526 | RMCC_1715 | Penicillin-binding protein pbpA. | D-alanyl-D-alanine carboxypeptidase. | 0.902 |
RMCC_3526 | RMCC_2158 | Penicillin-binding protein pbpA. | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | 0.739 |
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