Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RMCC_0054 | RMCC_0226 | Regulatory proteins IclR. | Urea amidolyase. | 0.826 |
RMCC_0054 | RMCC_6697 | Regulatory proteins IclR. | Regulatory proteins IclR. | 0.765 |
RMCC_0226 | RMCC_0054 | Urea amidolyase. | Regulatory proteins IclR. | 0.826 |
RMCC_0226 | RMCC_0450 | Urea amidolyase. | Uncharacterized protein. | 0.826 |
RMCC_0226 | RMCC_1722 | Urea amidolyase. | IclR-family transcriptional regulator. | 0.826 |
RMCC_0226 | RMCC_1920 | Urea amidolyase. | Transcriptional regulator. | 0.826 |
RMCC_0226 | RMCC_5506 | Urea amidolyase. | IclR family transcriptional regulator. | 0.826 |
RMCC_0226 | RMCC_6457 | Urea amidolyase. | IclR family transcriptional regulator. | 0.826 |
RMCC_0226 | RMCC_6697 | Urea amidolyase. | Regulatory proteins IclR. | 0.826 |
RMCC_0450 | RMCC_0226 | Uncharacterized protein. | Urea amidolyase. | 0.826 |
RMCC_0450 | RMCC_6697 | Uncharacterized protein. | Regulatory proteins IclR. | 0.773 |
RMCC_1722 | RMCC_0226 | IclR-family transcriptional regulator. | Urea amidolyase. | 0.826 |
RMCC_1722 | RMCC_6697 | IclR-family transcriptional regulator. | Regulatory proteins IclR. | 0.771 |
RMCC_1920 | RMCC_0226 | Transcriptional regulator. | Urea amidolyase. | 0.826 |
RMCC_1920 | RMCC_5506 | Transcriptional regulator. | IclR family transcriptional regulator. | 0.769 |
RMCC_1920 | RMCC_6457 | Transcriptional regulator. | IclR family transcriptional regulator. | 0.772 |
RMCC_1920 | RMCC_6697 | Transcriptional regulator. | Regulatory proteins IclR. | 0.765 |
RMCC_3336 | RMCC_4120 | Chromosome replication initiation inhibitor protein; Belongs to the LysR transcriptional regulatory family. | Transcriptional regulator. | 0.784 |
RMCC_3336 | RMCC_4395 | Chromosome replication initiation inhibitor protein; Belongs to the LysR transcriptional regulatory family. | DNA-binding transcriptional activator. | 0.783 |
RMCC_3336 | RMCC_6697 | Chromosome replication initiation inhibitor protein; Belongs to the LysR transcriptional regulatory family. | Regulatory proteins IclR. | 0.760 |
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