Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCC_0066 | RMCC_2390 | RMCC_0066 | RMCC_2390 | ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. | Ribonuclease D. | 0.833 |
RMCC_0066 | RMCC_3533 | RMCC_0066 | RMCC_3533 | ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. | Iron-regulated peptidyl-prolyl-cis-trans-isomerase A ppiA; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.907 |
RMCC_0066 | RMCC_5118 | RMCC_0066 | RMCC_5118 | ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. | 30S ribosomal protein S1. | 0.937 |
RMCC_0066 | RMCC_5438 | RMCC_0066 | RMCC_5438 | ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.898 |
RMCC_0066 | RMCC_6819 | RMCC_0066 | RMCC_6819 | ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. | ATP-dependent helicase HrpA. | 0.949 |
RMCC_0066 | rph | RMCC_0066 | RMCC_2572 | ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.870 |
RMCC_0066 | rpsD | RMCC_0066 | RMCC_4246 | ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.934 |
RMCC_0066 | rpsK | RMCC_0066 | RMCC_4247 | ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.911 |
RMCC_2390 | RMCC_0066 | RMCC_2390 | RMCC_0066 | Ribonuclease D. | ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. | 0.833 |
RMCC_2390 | RMCC_3533 | RMCC_2390 | RMCC_3533 | Ribonuclease D. | Iron-regulated peptidyl-prolyl-cis-trans-isomerase A ppiA; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.634 |
RMCC_2390 | RMCC_5118 | RMCC_2390 | RMCC_5118 | Ribonuclease D. | 30S ribosomal protein S1. | 0.991 |
RMCC_2390 | RMCC_5438 | RMCC_2390 | RMCC_5438 | Ribonuclease D. | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.634 |
RMCC_2390 | RMCC_6216 | RMCC_2390 | RMCC_6216 | Ribonuclease D. | ATP-dependent RNA helicase. | 0.833 |
RMCC_2390 | RMCC_6819 | RMCC_2390 | RMCC_6819 | Ribonuclease D. | ATP-dependent helicase HrpA. | 0.986 |
RMCC_2390 | deaD | RMCC_2390 | RMCC_3649 | Ribonuclease D. | Cold-shock deaD-box protein A deaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.833 |
RMCC_2390 | rph | RMCC_2390 | RMCC_2572 | Ribonuclease D. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.989 |
RMCC_2390 | rpsD | RMCC_2390 | RMCC_4246 | Ribonuclease D. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.983 |
RMCC_2390 | rpsK | RMCC_2390 | RMCC_4247 | Ribonuclease D. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.982 |
RMCC_3533 | RMCC_0066 | RMCC_3533 | RMCC_0066 | Iron-regulated peptidyl-prolyl-cis-trans-isomerase A ppiA; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. | 0.907 |
RMCC_3533 | RMCC_2390 | RMCC_3533 | RMCC_2390 | Iron-regulated peptidyl-prolyl-cis-trans-isomerase A ppiA; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Ribonuclease D. | 0.634 |
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