STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HSM_0124PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hso:HS_0251 arginine ABC transporter, ATP-binding protein. (245 aa)    
Predicted Functional Partners:
HSM_0125
PFAM: extracellular solute-binding protein family 3; KEGG: hso:HS_0252 arginine ABC transporter, substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.993
HSM_0126
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hso:HS_0253 arginine ABC transporter, permease.
 
 
 0.988
HSM_0127
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hso:HS_0254 arginine ABC transporter, permease.
 
 0.988
HSM_0940
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: hso:HS_0591 peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.899
HSM_0080
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hso:HS_0211 amino acid ABC transporter, permease.
 
     0.831
HSM_0081
PFAM: extracellular solute-binding protein family 3; KEGG: hso:HS_0212 amino acid ABC transporter, substrate-binding; Belongs to the bacterial solute-binding protein 3 family.
 
  
 0.724
HSM_0123
KEGG: hso:HS_0250 fimbrial subunit; Belongs to the N-Me-Phe pilin family.
       0.479
HSM_1027
TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: hso:HS_1149 ABC transporter, ATP-binding protein/permease.
 
     
0.421
Your Current Organism:
Histophilus somni
NCBI taxonomy Id: 228400
Other names: H. somni 2336, Haemophilus somnus 2336, Histophilus somni 2336, Histophilus somni str. 2336
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