STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HSM_0201PFAM: protein of unknown function UPF0005; KEGG: hso:HS_0330 conserved integral membrane protein; Belongs to the BI1 family. (220 aa)    
Predicted Functional Partners:
HSM_0200
DsrC family protein; Part of a sulfur-relay system.
     
 0.617
HSM_1820
PFAM: protein of unknown function YGGT; KEGG: hso:HS_1658 conserved hypothetical protein.
  
     0.528
HSM_1395
PFAM: Colicin V production protein; KEGG: hso:HS_0917 colicin V production protein.
  
    0.512
HSM_1939
PFAM: protein of unknown function DUF513 hemX; KEGG: hso:HS_0046 uroporphyrin-III C-methyltransferase.
  
     0.460
HSM_0404
PFAM: MucB/RseB family protein; KEGG: hso:HS_1607 sigma-E factor regulatory protein RseB precursor.
  
     0.459
htpX
HtpX domain protein; PFAM: peptidase M48 Ste24p; HtpX domain protein; KEGG: hso:HS_0930 heat shock protein; Belongs to the peptidase M48B family.
  
  
 0.432
Your Current Organism:
Histophilus somni
NCBI taxonomy Id: 228400
Other names: H. somni 2336, Haemophilus somnus 2336, Histophilus somni 2336, Histophilus somni str. 2336
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.