STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HSM_0932PFAM: TonB-dependent receptor plug; KEGG: hso:HS_0582 transferrin binding protein A. (224 aa)    
Predicted Functional Partners:
HSM_0931
PFAM: TonB-dependent receptor; KEGG: hso:HS_0582 transferrin binding protein A.
   
 0.965
HSM_1100
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.728
HSM_1526
KEGG: plu:plu0643 hypothetical protein.
   
 
 0.590
HSM_1962
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: hso:HS_0069 iron-regulated outer membrane protein.
  
   
 0.588
HSM_1523
KEGG: dde:Dde_1416 hypothetical protein.
    
   0.556
HSM_1170
PFAM: protein of unknown function DUF1008; KEGG: hso:HS_0723 HugX protein.
 
    0.537
HSM_0933
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: hso:HS_0584 D-xylose ABC transporter, permease; Belongs to the binding-protein-dependent transport system permease family.
       0.498
xylG
D-xylose ABC transporter, ATPase subunit; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
       0.498
HSM_1169
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: hso:HS_0722 heme binding protein.
 
  
 0.431
HSM_0953
PFAM: Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: hso:HS_0602 possible adhesin.
  
     0.419
Your Current Organism:
Histophilus somni
NCBI taxonomy Id: 228400
Other names: H. somni 2336, Haemophilus somnus 2336, Histophilus somni 2336, Histophilus somni str. 2336
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