STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HSM_0945PFAM: conserved hypothetical protein 1620; KEGG: hso:HS_0596 hypothetical protein. (357 aa)    
Predicted Functional Partners:
HSM_0944
PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: hso:HS_0595 conserved hypothetical protein.
 
  
 0.984
HSM_0565
PFAM: protein of unknown function DUF416; KEGG: hso:HS_1539 hypothetical protein.
  
     0.710
HSM_1564
PFAM: high-affinity nickel-transporter; KEGG: hso:HS_1079 possible permease; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.578
HSM_0943
4-phytase; PFAM: extracellular solute-binding protein family 5; KEGG: hso:HS_0594 peptide ABC transporter, periplasmic-binding protein.
       0.565
HSM_0941
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hso:HS_0592 peptide ABC transporter, permease.
       0.542
HSM_0940
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: hso:HS_0591 peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.536
HSM_0359
Peptidase U6 penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
  
     0.533
HSM_1447
PFAM: porin Gram-negative type; KEGG: hso:HS_0971 outer membrane protein, OmpH family.
  
     0.529
HSM_0939
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hso:HS_0590 peptide ABC transporter, ATP-binding protein.
       0.520
HSM_1473
PFAM: protein of unknown function DUF440; KEGG: hso:HS_0995 hypothetical protein; Belongs to the UPF0263 family.
  
     0.507
Your Current Organism:
Histophilus somni
NCBI taxonomy Id: 228400
Other names: H. somni 2336, Haemophilus somnus 2336, Histophilus somni 2336, Histophilus somni str. 2336
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.