STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HSM_1138PFAM: phage P2 GpU family protein; KEGG: sgl:SG1860 putative phage tail protein. (147 aa)    
Predicted Functional Partners:
HSM_1137
PFAM: phage late control D family protein; KEGG: stt:t3444 putative regulator of late gene expression.
 
  
 0.985
HSM_1140
PFAM: phage major tail tube protein; KEGG: xcc:XCC2989 phage-related tail protein.
 
   0.981
HSM_1141
PFAM: phage tail sheath protein; KEGG: yps:YPTB1841 putative bacteriophage P2 tail sheath protein.
 
 
 0.981
HSM_1162
PFAM: phage tail X family protein; KEGG: hit:NTHI1882 hypothetical protein.
 
 
 0.979
HSM_1150
TIGRFAM: phage tail protein I; KEGG: hit:NTHI1858 predicted bacteriophage P2-related tail formation protein gpI.
 
 
 0.974
HSM_1151
PFAM: Baseplate J family protein; KEGG: hit:NTHI1860 predicted phage-related baseplate assembly protein.
 
 
 0.974
HSM_1152
PFAM: GPW/gp25 family protein; KEGG: hit:NTHI1861 predicted baseplate assembly protein W.
 
 
 0.971
HSM_1139
PFAM: phage tail E family protein; KEGG: rsp:RSP_3353 phage related tail protein.
 
    0.969
HSM_1158
PFAM: P2 phage tail completion R family protein; KEGG: yps:YPTB1850 gpR [Enterobacteria phage P2].
 
    0.944
HSM_0232
TIGRFAM: phage portal protein, PBSX family; PFAM: phage portal protein; KEGG: sgl:SG0244 putative phage capsid portal protein.
 
    0.942
Your Current Organism:
Histophilus somni
NCBI taxonomy Id: 228400
Other names: H. somni 2336, Haemophilus somnus 2336, Histophilus somni 2336, Histophilus somni str. 2336
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.